PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C022445P3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 238aa    MW: 26051.7 Da    PI: 4.7098
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C022445P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-07444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +e+ +++  C  ++  lC++C +e H        H++
  MELO3C022445P3  4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                    7*****************************65667777765 PP

2zf-B_box292.1e-095395238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + +kC+ +++k + +fC +++ l+C+dC + +H++      H+
  MELO3C022445P3 53 KLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSgslsanHQ 95
                    5799*****************************7667777775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3147IPR000315B-box-type zinc finger
CDDcd000211.34E-6347No hitNo description
PfamPF006432.0E-5444IPR000315B-box-type zinc finger
SMARTSM003368.9E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.935299IPR000315B-box-type zinc finger
SMARTSM003361.4E-135299IPR000315B-box-type zinc finger
PfamPF006433.5E-85395IPR000315B-box-type zinc finger
CDDcd000215.26E-75598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL STKLPKCDIC  60
QDKAAFIFCV EDRALFCQDC DEPIHSSGSL SANHQRFLAT GIRVAMSSSC TKDVDKVKME  120
PPNPKNPQVP AKVPSQQVPN FTSSWAVDDF LHFSDLESSD KQKEQLEFGE LEWLAEMGLF  180
GEQVPQEALA AAEVPELPTS HSGNAIACRP TKSSTSYKKP RIEMVDDEEF FTVPDLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841220.0EU284122.1 Cucumis sativus putative transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460037.11e-175PREDICTED: salt tolerance protein-like isoform X1
RefseqXP_008460038.11e-175PREDICTED: salt tolerance protein-like isoform X1
SwissprotQ962881e-103BBX24_ARATH; B-box zinc finger protein 24
TrEMBLE5GC891e-175E5GC89_CUCME; Salt-tolerance protein
STRINGPOPTR_0017s05700.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.16e-95DBB family protein